PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29883.m002031
Common NameLOC8274766, RCOM_0993110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 188aa    MW: 21120.8 Da    PI: 5.688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29883.m002031genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023658123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C++ F++   L  H++ H
  29883.m002031 36 YECVFCKRGFTTAQALGGHMNIH 58
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-43462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.55E-63462No hitNo description
PROSITE profilePS5015710.993663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MESNPHLEDA NKSSSEEETD RSEKANDHDM GTGRSYECVF CKRGFTTAQA LGGHMNIHRK  60
DRAKPSLASS SSISSKVDED YYASLRGYTP IQSFPPHYYS TANHHHEVHT NYQTFFPPSS  120
GGSFRPPNGD GLYVQSPQIL NPFEDDWRRS LSLQIGPSHV DDDHNKQKEK DGSVADELDL  180
ELRLGHDP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521018.11e-140PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLB9S4W11e-140B9S4W1_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0002s04250.12e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-14C2H2 family protein